PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g01620.1
Common NameZOSMA_16G01620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 266aa    MW: 30020.2 Da    PI: 9.733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g01620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-061481881055
                      HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      r+RR+ri ++ +eL +l+P         K+s ae+ + A +Y+k Lq
  Zosma16g01620.1 148 RQRRKRISNKTQELGKLVPGgH------KMSTAEMFQAAGKYVKFLQ 188
                      9******************955......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.233138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-11141196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-9143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-7146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMEEMSHHRK LHLHHRRLHH QQKPEEFGLR PTVNIGDSLF HDITINSVGN CELRELESVL  60
LPALLPNEHL IMSRSISPQP MVRSDPLDAA MSYRQQPTVL KRSRGDLIRN DPHVLGYRRP  120
SDNAFSVVSV GENEHEQTQL SPQSFAARQR RKRISNKTQE LGKLVPGGHK MSTAEMFQAA  180
GKYVKFLQAQ VGILSMISPP VEGSGRGGEK QLQQQLLSTT AIQEKLYQIE RCIVPNRTVE  240
GLANDPFVKS HPFISRDLER FTADS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806162.14e-40PREDICTED: transcription factor bHLH52-like
SwissprotQ9SA822e-25BH052_ARATH; Transcription factor bHLH52
TrEMBLA0A0K9PVE70.0A0A0K9PVE7_Z
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-26bHLH family protein